rs8262011 SNP Detail

Summary

• ID
  rs8262011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC ATGCACTCCC AGCCACCCAC
  Y
  GCTGCCACCG AGGCTGCATT CGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
ss12758658	IKBns_JC7174_12	ROCHEBIO	RPAMM	f	SNP		T		C	T	T	C	C	T	T		C	C		C
ss46058345	mCV22814530	ABI	CRAMUS_MOUSE	f	SNP	C		T					C		T
ss148677563	ENSMUSSNP4732713	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T							T
ss322134126	CHEV_7_31208351	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
rs8262011					SNP	C	T	T	C	T	T	C	C	T	T	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122757 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	524 bp distal
Cpgi18800	CpG island 18800	within coordinates
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1478 bp downstream
Rr400240	regulatory region 400240	899 bp downstream
Rr644814	regulatory region 644814	1590 bp distal
Rr644815	regulatory region 644815	916 bp distal
Rr644816	regulatory region 644816	47 bp distal
Tssr2184	transcription start site region 2184	12 bp upstream
Tssr65714	transcription start site region 65714	1590 bp downstream
Tssr65715	transcription start site region 65715	1037 bp downstream
Tssr65716	transcription start site region 65716	901 bp downstream
Tssr65717	transcription start site region 65717	888 bp downstream
Tssr65718	transcription start site region 65718	862 bp downstream
Tssr65719	transcription start site region 65719	39 bp downstream
Tssr65720	transcription start site region 65720	18 bp downstream
Tssr65721	transcription start site region 65721	30 bp upstream
Tssr65722	transcription start site region 65722	49 bp upstream
Tssr65723	transcription start site region 65723	80 bp upstream
Tssr65724	transcription start site region 65724	96 bp upstream
Tssr65725	transcription start site region 65725	268 bp upstream
Tssr65726	transcription start site region 65726	275 bp upstream
Tssr65727	transcription start site region 65727	293 bp upstream
Tssr65728	transcription start site region 65728	588 bp upstream
Tssr65729	transcription start site region 65729	906 bp upstream
Tssr65730	transcription start site region 65730	954 bp upstream
Tssr65731	transcription start site region 65731	980 bp upstream
Tssr65732	transcription start site region 65732	1018 bp upstream
Tssr65733	transcription start site region 65733	1046 bp upstream
Tssr65734	transcription start site region 65734	1087 bp upstream
Tssr65735	transcription start site region 65735	1886 bp upstream
Tssr65736	transcription start site region 65736	1905 bp upstream
Tssr65737	transcription start site region 65737	1939 bp upstream
Tssr65738	transcription start site region 65738	1995 bp upstream
Tssr71745	transcription start site region 71745	1696 bp upstream