rs8262012 SNP Detail

Summary

• ID
  rs8262012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGTGCTA GCCTCCCCAC
  TTCCTCAGTT TCCACTACGG TGGTGGAAAG TTGGTGCGGA GGAAAAGCGT GGAGGAAAAG
  GAAGGAAATG GCGGAGGCGG GGCCCTGCAC TCAACATCTT CTGTTGGCTT TGTAGTTCTC
  CAGCTCGCTC GAAGGAAAGG AGGGCGCCCA CATGCACTCC CAGCCACCCA CCGCTGCCAC
  Y
  GAGGCTGCAT TCGGGTGACT TAAACATTCC TGATGACTTC CTTCTGTCTT CCCACACACA
  GTGAGTCGGC CTGAGCGTAG TCACTGCCCA ACACAGACGG TAAAGAAGCT TCTGGAAGAA
  CAGAGGCGCC GACAGCAGCA GCCAGAGGCT GCTGGGGTGC CGGTGAGTCT CTGGAAGTCG
  CCATGTGCGC TGGGGGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12758659	IKBns_JC7174_13	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8262012					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	533 bp distal
Cpgi18800	CpG island 18800	within coordinates
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1487 bp downstream
Rr400240	regulatory region 400240	908 bp downstream
Rr644814	regulatory region 644814	1599 bp distal
Rr644815	regulatory region 644815	925 bp distal
Rr644816	regulatory region 644816	56 bp distal
Tssr2184	transcription start site region 2184	3 bp upstream
Tssr65714	transcription start site region 65714	1599 bp downstream
Tssr65715	transcription start site region 65715	1046 bp downstream
Tssr65716	transcription start site region 65716	910 bp downstream
Tssr65717	transcription start site region 65717	897 bp downstream
Tssr65718	transcription start site region 65718	871 bp downstream
Tssr65719	transcription start site region 65719	48 bp downstream
Tssr65720	transcription start site region 65720	27 bp downstream
Tssr65721	transcription start site region 65721	21 bp upstream
Tssr65722	transcription start site region 65722	40 bp upstream
Tssr65723	transcription start site region 65723	71 bp upstream
Tssr65724	transcription start site region 65724	87 bp upstream
Tssr65725	transcription start site region 65725	259 bp upstream
Tssr65726	transcription start site region 65726	266 bp upstream
Tssr65727	transcription start site region 65727	284 bp upstream
Tssr65728	transcription start site region 65728	579 bp upstream
Tssr65729	transcription start site region 65729	897 bp upstream
Tssr65730	transcription start site region 65730	945 bp upstream
Tssr65731	transcription start site region 65731	971 bp upstream
Tssr65732	transcription start site region 65732	1009 bp upstream
Tssr65733	transcription start site region 65733	1037 bp upstream
Tssr65734	transcription start site region 65734	1078 bp upstream
Tssr65735	transcription start site region 65735	1877 bp upstream
Tssr65736	transcription start site region 65736	1896 bp upstream
Tssr65737	transcription start site region 65737	1930 bp upstream
Tssr65738	transcription start site region 65738	1986 bp upstream
Tssr71745	transcription start site region 71745	1705 bp upstream