rs8262013 SNP Detail

Summary

• ID
  rs8262013
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                  g
  gtnggcctct cacttcgttt atagatgngt ntggcnttna nacctgaccc tctgccacca
  cctcgctggg attgcagggg tgtgcctcta ctcctagttA AAACAGAGAT ATTGGGAACC
  TGGAAATGCC TTTTCGGGAA GTTGAGATTA GCAAACNCCA NTCCTCCACN CCTAGTGTTA
  GGACCTGGTN GCCTAGGTTG GGATTTTTAA CGGATGTGGT GGTGCTTCNG AGGAGCCCGG
  TGTCTCCGGA GANGATAGAT GCTTCAGAGA AGTGCTAGCC TCCCCACTTC CTCAGTTTCC
  ACTACGGTGG TGGAAAGTTG GTGCNGAGGA AAAGCGTGGA GGAAAAGGAA GGAAATGGCG
  GAGGCGGGGC CCTGNACTCA ACATCTTCTG TTGGCTTTGT AGTTCTCCAG CTCNNTNGAA
  GGAAAGGAGG GCGCCCACAT GCACTCCCAG CCACCCACNG CTGCCACNGA GGCTGCATTC
  K
  GGTGACTTAA ACATTCCTGA TGACTTCCTT CTNTCTTCCC ACACACAGTG AGTCGGCCTG
  AGCGTNGTCA CTNCCCAANA NAGACGGTAA AGAAGCTTCT GGAANAACAG A         
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12758660	IKBns_JC7174_14	ROCHEBIO	RPAMM	f	SNP	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8262013					SNP	G	G	G	T	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122779 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	546 bp distal
Cpgi18800	CpG island 18800	within coordinates
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1500 bp downstream
Rr400240	regulatory region 400240	921 bp downstream
Rr644814	regulatory region 644814	1612 bp distal
Rr644815	regulatory region 644815	938 bp distal
Rr644816	regulatory region 644816	69 bp distal
Tssr2184	transcription start site region 2184	6 bp downstream
Tssr65714	transcription start site region 65714	1612 bp downstream
Tssr65715	transcription start site region 65715	1059 bp downstream
Tssr65716	transcription start site region 65716	923 bp downstream
Tssr65717	transcription start site region 65717	910 bp downstream
Tssr65718	transcription start site region 65718	884 bp downstream
Tssr65719	transcription start site region 65719	61 bp downstream
Tssr65720	transcription start site region 65720	40 bp downstream
Tssr65721	transcription start site region 65721	8 bp upstream
Tssr65722	transcription start site region 65722	27 bp upstream
Tssr65723	transcription start site region 65723	58 bp upstream
Tssr65724	transcription start site region 65724	74 bp upstream
Tssr65725	transcription start site region 65725	246 bp upstream
Tssr65726	transcription start site region 65726	253 bp upstream
Tssr65727	transcription start site region 65727	271 bp upstream
Tssr65728	transcription start site region 65728	566 bp upstream
Tssr65729	transcription start site region 65729	884 bp upstream
Tssr65730	transcription start site region 65730	932 bp upstream
Tssr65731	transcription start site region 65731	958 bp upstream
Tssr65732	transcription start site region 65732	996 bp upstream
Tssr65733	transcription start site region 65733	1024 bp upstream
Tssr65734	transcription start site region 65734	1065 bp upstream
Tssr65735	transcription start site region 65735	1864 bp upstream
Tssr65736	transcription start site region 65736	1883 bp upstream
Tssr65737	transcription start site region 65737	1917 bp upstream
Tssr65738	transcription start site region 65738	1973 bp upstream
Tssr71745	transcription start site region 71745	1718 bp upstream