rs8262014 SNP Detail

Summary

• ID
  rs8262014
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCGAAGGA AAGGAGGGCG CCCACATGCA CTCCCAGCCA
  CCCACCGCTG CCACCGAGGC TGCATTCGGG TGACTTAAAC ATTCCTGATG ACTTCCTTCT
  S
  TCTTCCCACA CACAGTGAGT CGGCCTGAGC GTAGTCACTG CCCAACACAG ACGGTAAAGA
  AGCTTCTGGA AGAACAGAGG CGCCGACAGC AGCAGCCAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
ss12758661	IKBns_JC7174_15	ROCHEBIO	RPAMM	f	SNP		C		G	C	G	G	C	C		G	G		G
ss46007986	mCV22814520	ABI	CRAMUS_MOUSE	f	SNP	G		C				G		C
ss148677568	ENSMUSSNP6959802	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						C
ss322134127	CHEV_7_31208406	CHEVERUD	SCREENING_POP	f	SNP										G			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
rs8262014					SNP	G	C	C	G	C	G	G	C	C	G	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	579 bp distal
Cpgi18800	CpG island 18800	within coordinates
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1533 bp downstream
Rr400240	regulatory region 400240	954 bp downstream
Rr644814	regulatory region 644814	1645 bp distal
Rr644815	regulatory region 644815	971 bp distal
Rr644816	regulatory region 644816	102 bp distal
Tssr2184	transcription start site region 2184	39 bp downstream
Tssr65714	transcription start site region 65714	1645 bp downstream
Tssr65715	transcription start site region 65715	1092 bp downstream
Tssr65716	transcription start site region 65716	956 bp downstream
Tssr65717	transcription start site region 65717	943 bp downstream
Tssr65718	transcription start site region 65718	917 bp downstream
Tssr65719	transcription start site region 65719	94 bp downstream
Tssr65720	transcription start site region 65720	73 bp downstream
Tssr65721	transcription start site region 65721	16 bp downstream
Tssr65722	transcription start site region 65722	within coordinates
Tssr65723	transcription start site region 65723	25 bp upstream
Tssr65724	transcription start site region 65724	41 bp upstream
Tssr65725	transcription start site region 65725	213 bp upstream
Tssr65726	transcription start site region 65726	220 bp upstream
Tssr65727	transcription start site region 65727	238 bp upstream
Tssr65728	transcription start site region 65728	533 bp upstream
Tssr65729	transcription start site region 65729	851 bp upstream
Tssr65730	transcription start site region 65730	899 bp upstream
Tssr65731	transcription start site region 65731	925 bp upstream
Tssr65732	transcription start site region 65732	963 bp upstream
Tssr65733	transcription start site region 65733	991 bp upstream
Tssr65734	transcription start site region 65734	1032 bp upstream
Tssr65735	transcription start site region 65735	1831 bp upstream
Tssr65736	transcription start site region 65736	1850 bp upstream
Tssr65737	transcription start site region 65737	1884 bp upstream
Tssr65738	transcription start site region 65738	1940 bp upstream
Tssr71745	transcription start site region 71745	1751 bp upstream