rs8262873 SNP Detail

Summary

• ID
  rs8262873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135757279 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                  GTATA ATCCCTCCGT CATANGCCTC GAATCCCCAG TGCGCTTATG
  GCCATCGGTC ANCCGCAGGA CAGCGNAAGG CTGGCCTGGT TATGTGCCCA CGTTCTCCTT
  Y
  TAGCNTCTTG GCTCCTCTCT CTTCCCTCTC CATCTNCTGT CCCCTTCCTT CCCTTGACTT
  CATCTCAGGC AGACAGGGCN CAAGCTGAAA GGTGCTCTAG CTCCAGCCTG AGANAGTGAG
  CCAATGGGAG ATNCAATGGG AGAAAACCAA GTGTGCTCAG GGGATANGNG TGTGAGATNT
  GGGCCGGGGT GTATGGGGGG GGGGGGAGGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	NZB/BlNJ	SPRET/EiJ
ss12759607	Por_3_AN2826_2	ROCHEBIO	RPAMM	f	SNP	T	C	T	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	NZB/BlNJ	SPRET/EiJ
rs8262873					SNP	T	C	T	C	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135757279 () rs orientation: reverse

Symbol	Name	Function Class
Por	cytochrome p450 oxidoreductase	within coordinates
Rr124528	regulatory region 124528	878 bp distal
Tssr49178	transcription start site region 49178	231 bp upstream
Tssr49179	transcription start site region 49179	1868 bp upstream