rs8262880 SNP Detail

Summary

• ID
  rs8262880
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135757110 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GCTGGCCTGG TTATGTGCCC
  ACGTTCTCCT TCTAGCGTCT TGGCTCCTCT CTCTTCCCTC TCCATCTTCT GTCCCCTTCC
  TTCCCTTGAC TTCATCTCAG GCAGACAGGG CCCAAGCTGA AAGGTGCTCT AGCTCCAGCC
  TGAGACAGTG AGCCAATGGG AGATCCAATG GGAGAAAACC AAGTGTGCTC AGGGGATAGG
  W
  GTGTGAGATG TGGGCCGGGG TGTATGGGGG GGGGGGGAGG GCTGTGCATG TGCAGAGATA
  GCCCAGCAAC GAAGAGGGCT TGATCCCCAG TCATGAGGAT GAGAGTTTGC ATCCCACACC
  ACGACAAGCT GGCCATCCTG TGCTACCTCT AGCCTGTATG TGCGCACAGC TGCATATACT
  TACACAGAAT ATATACACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12759614	Por_3_AN2826_9	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8262880					SNP	A	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135757110 () rs orientation: reverse

Symbol	Name	Function Class
Por	cytochrome p450 oxidoreductase	within coordinates
Rr124528	regulatory region 124528	709 bp distal
Tssr49178	transcription start site region 49178	400 bp upstream