rs8262889 SNP Detail

Summary

• ID
  rs8262889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135758620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGTGATGC CTCTTCCTCG
  GCTATGGAAG GTGTTGAATG GTGTCATCTC AGAGAGCTCT AAGCCCGTCT TATGTTGAGG
  CTCTTAGTAA CTCGTACGTT AAAGCTGAGG ACAGAGTCAT GGTGGGGCTG GGAGAGGCTA
  TGGTTAGGGC CAGTGGAGTC CCTTCTCATC CATACGCCAT TGTGCCCATG CTGTTCCTCA
  Y
  AAGCCAGTAC AGGATATGGC AGACCCCAGC CATGTCCTTA AGGGCTAGGG CAGGAGCATC
  ATTGCCCCTG ACTCTCCGCC AGCTCGGCAG GCTTATTCTT GTGGTACTGC CTACCCCATC
  CCCTTACACA GCTGGCTCTG TGCAGTGCAC GAAACCGCCA GCAACCCCGG GAAGGGAGGG
  AGCAGGTGGC CTAGGAGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SPRET/EiJ
ss12759623	Por_3_AN2827_8	ROCHEBIO	RPAMM	f	SNP					C		C	C	C	T	C	C	C	C
ss20413783	PS02182925	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C		C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SPRET/EiJ
rs8262889					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135758620 () rs orientation: forward

Symbol	Name	Function Class
Por	cytochrome p450 oxidoreductase	within coordinates
Tssr49178	transcription start site region 49178	1099 bp downstream
Tssr49179	transcription start site region 49179	527 bp upstream