rs8262890 SNP Detail

Summary

• ID
  rs8262890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135758627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCTTCC TCGGCTATGG
  AAGGTGTTGA ATGGTGTCAT CTCAGAGAGC TCTAAGCCCG TCTTATGTTG AGGCTCTTAG
  TAACTCGTAC GTTAAAGCTG AGGACAGAGT CATGGTGGGG CTGGGAGAGG CTATGGTTAG
  GGCCAGTGGA GTCCCTTCTC ATCCATACGC CATTGTGCCC ATGCTGTTCC TCACAAGCCA
  R
  TACAGGATAT GGCAGACCCC AGCCATGTCC TTAAGGGCTA GGGCAGGAGC ATCATTGCCC
  CTGACTCTCC GCCAGCTCGG CAGGCTTATT CTTGTGGTAC TGCCTACCCC ATCCCCTTAC
  ACAGCTGGCT CTGTGCAGTG CACGAAACCG CCAGCAACCC CGGGAAGGGA GGGAGCAGGT
  GGCCTAGGAG TAGCCTCGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12759624	Por_3_AN2827_9	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8262890					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135758627 () rs orientation: forward

Symbol	Name	Function Class
Por	cytochrome p450 oxidoreductase	within coordinates
Tssr49178	transcription start site region 49178	1106 bp downstream
Tssr49179	transcription start site region 49179	520 bp upstream