rs8263805 SNP Detail

Summary

• ID
  rs8263805
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53869865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCGCTCT TCAGAGTAAC
  CTTACATGCC TTACCTAACC TCTTCAGTGA TCTTGTCCCA GAATACTGTG GAAAAGACTC
  CATACCAACA AGTCACCCTG GATAGATCTG CAGACACATG GGTCCTTAAG AAGTAACAAT
  CCATCGCTGG CAAATGGAAA ACAGTTTCTC CTGGGGCATG GCAAGACTTC ATTTTGGGGT
  R
  AGGATAGGTG AGGGAAGAAA GAATAACTCC AGAAAGGGTA GAGAGTTTGG AACACACGTT
  TCTTTAACTT TAAAAAGTTC TGCAAAGAGT CTTTCCTTTC TGAACAGAGG CTAAAACCTG
  TGGTCTCTTC TCTGGAGCAA GTCTGAATCC GGCCCCTCTG AATCACATCA CTACCTCGAG
  AAAGTCCCAC CACTCAGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12760587	Slc22a9_4_AN4353_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
ss12761535	Slc22a5_4_AN4297_24	ROCHEBIO	RPAMM	r	SNP		T	T	T	T	T	T				T			T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8263805					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53869865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	382 bp proximal
Gm30927	predicted gene, 30927	992 bp upstream
Rr447212	regulatory region 447212	1157 bp distal
Rr447213	regulatory region 447213	208 bp proximal
Rr447214	regulatory region 447214	881 bp proximal
Rr447215	regulatory region 447215	1283 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	986 bp upstream
Tssr101465	transcription start site region 101465	1005 bp upstream
Tssr107965	transcription start site region 107965	848 bp downstream
Tssr107966	transcription start site region 107966	910 bp downstream
Tssr107967	transcription start site region 107967	1232 bp downstream
Tssr107968	transcription start site region 107968	1257 bp downstream
Tssr107969	transcription start site region 107969	1315 bp downstream