rs8263806 SNP Detail

Summary

• ID
  rs8263806
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53869868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATCTGCAG ACACATGGGT CCTTAAGAAG TAACAATCCA
  TCGCTGGCAA ATGGAAAACA GTTTCTCCTG GGGCATGGCA AGACTTCATT TTGGGGTAAG
  R
  ATAGGTGAGG GAAGAAAGAA TAACTCCAGA AAGGGTAGAG AGTTTGGAAC ACACGTTTCT
  TTAACTTTAA AAAGTTCTGC AAAGAGTCTT TCCTTTCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12760588	Slc22a9_4_AN4353_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G
ss12761534	Slc22a5_4_AN4297_23	ROCHEBIO	RPAMM	r	SNP		C	C	C	T	C	C	C	C	C	T	C	C	C	C
ss132135329	ENSMUSSNP5593566	ENSEMBL	ENSEMBL_Sanger	f	SNP											A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8263806					SNP	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53869868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	379 bp proximal
Gm30927	predicted gene, 30927	989 bp upstream
Rr447212	regulatory region 447212	1160 bp distal
Rr447213	regulatory region 447213	205 bp proximal
Rr447214	regulatory region 447214	878 bp proximal
Rr447215	regulatory region 447215	1280 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	983 bp upstream
Tssr101465	transcription start site region 101465	1002 bp upstream
Tssr107965	transcription start site region 107965	845 bp downstream
Tssr107966	transcription start site region 107966	907 bp downstream
Tssr107967	transcription start site region 107967	1229 bp downstream
Tssr107968	transcription start site region 107968	1254 bp downstream
Tssr107969	transcription start site region 107969	1312 bp downstream