rs8263807 SNP Detail

Summary

• ID
  rs8263807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53869870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTTCAGA GTAACCTTAC
  ATGCCTTACC TAACCTCTTC AGTGATCTTG TCCCAGAATA CTGTGGAAAA GACTCCATAC
  CAACAAGTCA CCCTGGATAG ATCTGCAGAC ACATGGGTCC TTAAGAAGTA ACAATCCATC
  GCTGGCAAAT GGAAAACAGT TTCTCCTGGG GCATGGCAAG ACTTCATTTT GGGGTAAGGA
  Y
  AGGTGAGGGA AGAAAGAATA ACTCCAGAAA GGGTAGAGAG TTTGGAACAC ACGTTTCTTT
  AACTTTAAAA AGTTCTGCAA AGAGTCTTTC CTTTCTGAAC AGAGGCTAAA ACCTGTGGTC
  TCTTCTCTGG AGCAAGTCTG AATCCGGCCC CTCTGAATCA CATCACTACC TCGAGAAAGT
  CCCACCACTC AGGGTCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12760589	Slc22a9_4_AN4353_4	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
ss12761533	Slc22a5_4_AN4297_22	ROCHEBIO	RPAMM	r	SNP			A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8263807					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53869870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	377 bp proximal
Gm30927	predicted gene, 30927	987 bp upstream
Rr447212	regulatory region 447212	1162 bp distal
Rr447213	regulatory region 447213	203 bp proximal
Rr447214	regulatory region 447214	876 bp proximal
Rr447215	regulatory region 447215	1278 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	981 bp upstream
Tssr101465	transcription start site region 101465	1000 bp upstream
Tssr107965	transcription start site region 107965	843 bp downstream
Tssr107966	transcription start site region 107966	905 bp downstream
Tssr107967	transcription start site region 107967	1227 bp downstream
Tssr107968	transcription start site region 107968	1252 bp downstream
Tssr107969	transcription start site region 107969	1310 bp downstream