rs8263817 SNP Detail

Summary

• ID
  rs8263817
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53870113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                  TTAACA ATCCATCGCT
  GGCAAATGGA AAACAGTTTC TCCTGGGGCA TGGCAAGACT TCATTTTGGG NTNAGNANAG
  GTGAGGGAAG AAAGAATAAC TCCAGAAAGG GTAGAGAGTT TGGAACACAC GTTTCTTTAA
  CTTTAAAAAG TTCTGCAANG AGTCTTTCCT TTCTGAACAG AGGCTAAAAC NTGNGGNCTC
  TTCTCTGGAG CNAGTCTGAA TCCGGCCCCT CTNAATCACA TCACTACCTC GAGAAAGTCC
  CNCCNCTCAG GGTCTCAGGG CATCTCCTNG GGGCAGAACC TTCTGGACTC TATCTTCAAT
  K
  GGACCCTATG GACGGATGGT CTGCCAGACA NTTGTCCTCT GAGGGGGGTA CTATGGCTAA
  A                                                                
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SPRET/EiJ
ss12760599	Slc22a9_4_AN4353_14	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	G	G	G	G	G	G	G	G	G	G		T
ss12761512	Slc22a5_4_AN4297_1	ROCHEBIO	RPAMM	r	SNP			C	C	C	C	C	C	C	C	C	C	C	C	C		A
ss20399517	PS02176871	PERLEGEN	MM_PANEL	f	SNP		G	G	G	G	G	G	G	G	G	G	G	G	G		G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SPRET/EiJ
rs8263817					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53870113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	134 bp proximal
Gm30927	predicted gene, 30927	744 bp upstream
Rr447212	regulatory region 447212	1405 bp distal
Rr447213	regulatory region 447213	within coordinates
Rr447214	regulatory region 447214	633 bp proximal
Rr447215	regulatory region 447215	1035 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	738 bp upstream
Tssr101465	transcription start site region 101465	757 bp upstream
Tssr107965	transcription start site region 107965	600 bp downstream
Tssr107966	transcription start site region 107966	662 bp downstream
Tssr107967	transcription start site region 107967	984 bp downstream
Tssr107968	transcription start site region 107968	1009 bp downstream
Tssr107969	transcription start site region 107969	1067 bp downstream