rs8263818 SNP Detail

Summary

• ID
  rs8263818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53870144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAAGTCCC ACCACTCAGG GTCTCAGGGC ATCTCCTAGG
  GGCAGAACCT TCTGGACTCT ATCTTCAATG GGACCCTATG GACGGATGGT CTGCCAGACA
  Y
  TTGTCCTCTG AGGGGCGTAC TATGGCTAGA AGTCATCTCA TAAAATGTTC TTAAAGGATG
  CTCATCACCA GGGAGCTTGT GGTTAAACTA AGGAACAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12760600	Slc22a9_4_AN4353_15	ROCHEBIO	RPAMM	f	SNP	T				T	T	C	T	T		T	T						T		C	C			C
ss12760601	Slc22a9_4_AN4354_1	ROCHEBIO	RPAMM	f	SNP	T			T	T	T	C	T	T		T	T	C	C				T						C
ss20411153	PS02176872	PERLEGEN	MM_PANEL	f	SNP			T	T	T	T	C	T	T		T	T	C	C				T		C		C		C
ss37208449	NES08438009	PERLEGEN	MM_PANEL2	f	SNP		T			T	T		T		T	T		C	C	T	C	C		T			C	C		C
ss132135341	ENSMUSSNP7091569	ENSEMBL	ENSEMBL_Sanger	f	SNP					T									C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8263818					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T	C	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37208449	NES08438009	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53870144 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	103 bp proximal
Gm30927	predicted gene, 30927	713 bp upstream
Rr447212	regulatory region 447212	1436 bp distal
Rr447213	regulatory region 447213	within coordinates
Rr447214	regulatory region 447214	602 bp proximal
Rr447215	regulatory region 447215	1004 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	707 bp upstream
Tssr101465	transcription start site region 101465	726 bp upstream
Tssr107965	transcription start site region 107965	569 bp downstream
Tssr107966	transcription start site region 107966	631 bp downstream
Tssr107967	transcription start site region 107967	953 bp downstream
Tssr107968	transcription start site region 107968	978 bp downstream
Tssr107969	transcription start site region 107969	1036 bp downstream