rs8263820 SNP Detail

Summary

• ID
  rs8263820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53870168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGGCATCT CCTAGGGGCA GAACCTTCTG GACTCTATCT
  TCAATGGGAC CCTATGGACG GATGGTCTGC CAGACATTTG TCCTCTGAGG GGCGTACTAT
  R
  GCTAGAAGTC ATCTCATAAA ATGTTCTTAA AGGATGCTCA TCACCAGGGA GCTTGTGGTT
  AAACTAAGGA ACAACCATTG CCTGCGATGT CACCAGACC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss12760602	Slc22a9_4_AN4354_2	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	A	G	G	G	G	A	A	G	G		G
ss20399518	PS02176873	PERLEGEN	MM_PANEL	f	SNP		G	G	G	G	A	G	G	G	G	A	A	G	G	G	G
ss132135345	ENSMUSSNP5565342	ENSEMBL	ENSEMBL_Sanger	f	SNP				G								A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs8263820					SNP	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53870168 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	79 bp proximal
Gm30927	predicted gene, 30927	689 bp upstream
Rr447212	regulatory region 447212	1460 bp distal
Rr447213	regulatory region 447213	within coordinates
Rr447214	regulatory region 447214	578 bp proximal
Rr447215	regulatory region 447215	980 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	683 bp upstream
Tssr101465	transcription start site region 101465	702 bp upstream
Tssr107965	transcription start site region 107965	545 bp downstream
Tssr107966	transcription start site region 107966	607 bp downstream
Tssr107967	transcription start site region 107967	929 bp downstream
Tssr107968	transcription start site region 107968	954 bp downstream
Tssr107969	transcription start site region 107969	1012 bp downstream