rs8264698 SNP Detail

Summary

• ID
  rs8264698
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:53870553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

        CGGC ATTTCTGAGG CACCTNTCGT CCGTCCTTCG TCTCCANCGG GATACTGTGG
  TTGCGCCACG CGCTGCTCAG GTTCACGGTG TGAGGNANNA GGCAACGGTG CTCCGGGNTC
  S
  CCGCCAGGAA CACGNNNGAC ANNCCANTNA AGCCATTGGG GATGATGCTG GCGCTGAGCA
  GGAAGAAGAT GAGGCGCTGG AAGGTCCCCC ACTCGCCCAG GAAGGCNGTC ACCTCGTCGT
  AGTCNNGCAT NCNGTCNGCA GCCCACGGCG TCCCGCCGGG AATCATAGGA TACTCGGGTG
  CAGTGGGNGG CGCACGGTTT GTCCGTGCAC GCGGAGCACC AGTCACTCGT CGAAGAGGAG
  TTCGAGAAAG CGTCGGGAGA CGTTTTCCAC ACGGAGAAGC TCGTGAGTTC CNCCCGCCGC
  CNCANACCCC GCCACCGCCA AN                                         
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cByJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12761493	Slc22a5_4_AN4294_6	ROCHEBIO	RPAMM	f	SNP	G	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cByJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8264698					SNP	G	C	G	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53870553 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2880	CpG island 2880			within coordinates
Gm30927	predicted gene, 30927			304 bp upstream
Rr447212	regulatory region 447212			1845 bp distal
Rr447213	regulatory region 447213			within coordinates
Rr447214	regulatory region 447214			193 bp proximal
Rr447215	regulatory region 447215			595 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr101464	transcription start site region 101464			298 bp upstream
Tssr101465	transcription start site region 101465			317 bp upstream
Tssr107965	transcription start site region 107965			160 bp downstream
Tssr107966	transcription start site region 107966			222 bp downstream
Tssr107967	transcription start site region 107967			544 bp downstream
Tssr107968	transcription start site region 107968			569 bp downstream
Tssr107969	transcription start site region 107969			627 bp downstream