rs8264702 SNP Detail

Summary

• ID
  rs8264702
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:53870575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                  CGGCAT TTCTGAGGCA
  CCTNTCGTCC GTCCTTCGTC TCCANCGGGA TACTGTGGTT GCGCCACGCG CTGCTCAGGT
  TCACGGTGTG AGGNANNAGG CAACGGTGCT CCGGGNTCNC CGCCAGGAAC ACGNNNGACA
  W
  NCCANTNAAG CCATTGGGGA TGATGCTGGC GCTGAGCAGG AAGAAGATGA GGCGCTGGAA
  GGTCCCCCAC TCGCCCAGGA AGGCNGTCAC CTCGTCGTAG TCNNGCATNC NGTCNGCAGC
  CCACGGCGTC CCGCCGGGAA TCATAGGATA CTCGGGTGCA GTGGGNGGCG CACGGTTTGT
  CCGTGCACGC GGAGCACCAG TCACTCGTCG AAGAGGAGTT CGAGAAAGCG TCGGGAGACG
  TTTTCCACAC GGAGAAGCTC GTGAGTTCCN CCCGCCGCCN CANACCCCGC CACCGCCAAN
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12761497	Slc22a5_4_AN4294_10	ROCHEBIO	RPAMM	f	SNP	A	A	T	A	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8264702					SNP	A	A	T	A	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53870575 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2880	CpG island 2880			within coordinates
Gm30927	predicted gene, 30927			282 bp upstream
Rr447212	regulatory region 447212			1867 bp distal
Rr447213	regulatory region 447213			within coordinates
Rr447214	regulatory region 447214			171 bp proximal
Rr447215	regulatory region 447215			573 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr101464	transcription start site region 101464			276 bp upstream
Tssr101465	transcription start site region 101465			295 bp upstream
Tssr107965	transcription start site region 107965			138 bp downstream
Tssr107966	transcription start site region 107966			200 bp downstream
Tssr107967	transcription start site region 107967			522 bp downstream
Tssr107968	transcription start site region 107968			547 bp downstream
Tssr107969	transcription start site region 107969			605 bp downstream