rs8264705 SNP Detail

Summary

• ID
  rs8264705
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53870582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                          CGG CATTTCTGAG GCACCTNTCG
  TCCGTCCTTC GTCTCCANCG GGATACTGTG GTTGCGCCAC GCGCTGCTCA GGTTCACGGT
  GTGAGGNANN AGGCAACGGT GCTCCGGGNT CNCCGCCAGG AACACGNNNG ACANNCCANT
  R
  AAGCCATTGG GGATGATGCT GGCGCTGAGC AGGAAGAAGA TGAGGCGCTG GAAGGTCCCC
  CACTCGCCCA GGAAGGCNGT CACCTCGTCG TAGTCNNGCA TNCNGTCNGC AGCCCACGGC
  GTCCCGCCGG GAATCATAGG ATACTCGGGT GCAGTGGGNG GCGCACGGTT TGTCCGTGCA
  CGCGGAGCAC CAGTCACTCG TCGAAGAGGA GTTCGAGAAA GCGTCGGGAG ACGTTTTCCA
  CACGGAGAAG CTCGTGAGTT CCNCCCGCCG CCNCANACCC CGCCACCGCC AAN       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	BALB/cByJ	NZB/BlNJ	NZW/Lac
ss12761500	Slc22a5_4_AN4294_13	ROCHEBIO	RPAMM	f	SNP	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	BALB/cByJ	NZB/BlNJ	NZW/Lac
rs8264705					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53870582 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	within coordinates
Gm30927	predicted gene, 30927	275 bp upstream
Rr447212	regulatory region 447212	1874 bp distal
Rr447213	regulatory region 447213	within coordinates
Rr447214	regulatory region 447214	164 bp proximal
Rr447215	regulatory region 447215	566 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	269 bp upstream
Tssr101465	transcription start site region 101465	288 bp upstream
Tssr107965	transcription start site region 107965	131 bp downstream
Tssr107966	transcription start site region 107966	193 bp downstream
Tssr107967	transcription start site region 107967	515 bp downstream
Tssr107968	transcription start site region 107968	540 bp downstream
Tssr107969	transcription start site region 107969	598 bp downstream