rs8265673 SNP Detail

Summary

• ID
  rs8265673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102247406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGAAGAAG GCTTCTTCAA
  ACACCAGCAG GGGTCCTGAG AAGCCTAGCA CAAGCAGGGG CTGTGCCCCC AGGAGAGCAA
  AGAGAATGCC TTGCACTGCT GTGGAGATGA GCAGCTCCGA CACCCCCATC AAGTTCCGGG
  TCTTTTCTCC TGTGGGGGGA AATGCCATAC AGGGATCAAG ATGGAGAGAT TAGTTTCGGG
  R
  ATCGAGAGTT AAGTTATGGG GTATGACCTG CAGAGCATCA GATTGGTTCA GAAGTGAGGG
  GGCAGAGGCC AGAGGGTTAG AGGTGAATGT TCTGGGCGGG GGGTGTGGCG GGGGGAGAAC
  CATAATTGTC ACTGACCCAG GAGGCCGCCG AAGGTGACGG CAGGTGACAA GGCAGCAAAG
  TAGATGAAGA TGACAGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12762551	Slc4a1_AN4621_1	ROCHEBIO	RPAMM	f	SNP	G			A	A	G	G	G			G	G
ss37280189	NES08547106	PERLEGEN	MM_PANEL2	f	SNP		G			A	G		G	G	G		G	G	G	G	G	G	G	A
ss38716294	mCV24348676	ABI	CRAMUS_MOUSE	f	SNP			G		A						G	G
ss132735926	ENSMUSSNP6283209	ENSEMBL	ENSEMBL_Sanger	f	SNP					A							G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8265673					SNP	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37280189	NES08547106	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102247406 () rs orientation: forward

Symbol	Name	Function Class
Rr245874	regulatory region 245874	within coordinates
Slc4a1	solute carrier family 4 (anion exchanger), member 1	within coordinates
Tssr111049	transcription start site region 111049	438 bp upstream
Tssr111050	transcription start site region 111050	388 bp upstream
Tssr111051	transcription start site region 111051	340 bp upstream
Tssr111052	transcription start site region 111052	130 bp upstream
Tssr111053	transcription start site region 111053	74 bp upstream
Tssr111054	transcription start site region 111054	248 bp downstream
Tssr111055	transcription start site region 111055	309 bp downstream
Tssr111056	transcription start site region 111056	504 bp downstream
Tssr111057	transcription start site region 111057	581 bp downstream
Tssr111058	transcription start site region 111058	1897 bp downstream