rs8265680 SNP Detail

Summary

• ID
  rs8265680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102248973 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCCCC TCTCTTGAAT TCATAAACTA
  Y
  GAGTCCCAGT GGCCTGGCTT CACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12762558	Slc4a1_AN4624_7	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8265680					SNP	C	C	C	C	C	C	C	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102248973 () rs orientation: reverse

Symbol	Name	Function Class
Rr245874	regulatory region 245874	within coordinates
Slc4a1	solute carrier family 4 (anion exchanger), member 1	within coordinates
Tssr111050	transcription start site region 111050	1955 bp upstream
Tssr111051	transcription start site region 111051	1907 bp upstream
Tssr111052	transcription start site region 111052	1697 bp upstream
Tssr111053	transcription start site region 111053	1641 bp upstream
Tssr111054	transcription start site region 111054	1308 bp upstream
Tssr111055	transcription start site region 111055	1236 bp upstream
Tssr111056	transcription start site region 111056	1051 bp upstream
Tssr111057	transcription start site region 111057	975 bp upstream
Tssr111058	transcription start site region 111058	330 bp downstream