rs8266395 SNP Detail

Summary

• ID
  rs8266395
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46401187 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             AAGCCANGAG GTTCCACTGA GAGGAAACAC AGCAATCAAT NAGTTTCTGT
  GNCNNGNTCT GCNTCTCACC TGGTGTCTNC TGNGCAGATC TGGTGGTCTA TGGGTNTAGG
  TGAGAGGAGG CANGCATTTA TGCTGAGCCT CCCTNCTCAG GTGAGGGNCA AGGACAGCCT
  R
  GCACCNCCCT TGGNAANACT CCAGNCAAGT CATTTCTTGT AAAGACTGTG ACAGAAATCT
  TCCCGGTGTC CTGTGAGCTC TTNATNCACA GGTCATTNTC CCTCATTGTG CAATGGGAGC
  ACNGGAGACA ATTTTCTGTG CGGTGGCAAT CTTCTGGGGN GTAGTAGCCT GGGGTCAACA
  GTGAGGGGAG AGAGGGTGCC AAGAGGAAGG CAGTGTGTGT CCTGGGAGGG GATAGGGGCT
  CCTANGNAAG CAGTCAGAAC TGTTCCTGCA GAGAANACTC GACTTTNTAA NCAATGCTCA
  GGCTGTCCCT GGTTTTGTtt tgtttnntnt tttgtttttt gtttgtttgt ttgtttgttt
  AGGACTGANA CTTTAAACAT TTGCTTCTTT CTGTCTGTCT ATCTCNCCCN CCCTCTTTC 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12763289	Saa2_JC7060_13	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	G	G	G	G	G	A	G	G	G	A	G
ss149179945	ENSMUSSNP201344	ENSEMBL	ENSEMBL_Sanger	r	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8266395					SNP	G	A	G	G	G	G	G	G	G	G	A	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46401187 () rs orientation: reverse

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	417 bp distal
Gm74180	predicted gene, 74180	within coordinates
Saa2	serum amyloid A 2	70 bp upstream
Tssr66700	transcription start site region 66700	69 bp upstream
Tssr66701	transcription start site region 66701	590 bp upstream
Tssr66702	transcription start site region 66702	1653 bp upstream
Tssr66703	transcription start site region 66703	1676 bp upstream
Tssr66704	transcription start site region 66704	1731 bp upstream