rs8266397 SNP Detail

Summary

• ID
  rs8266397
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46401173 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                               AAGC
  CANGAGGTTC CACTGAGAGG AAACACAGCA ATCAATNAGT TTCTGTGNCN NGNTCTGCNT
  CTCACCTGGT GTCTNCTGNG CAGATCTGGT GGTCTATGGG TNTAGGTGAG AGGAGGCANG
  CATTTATGCT GAGCCTCCCT NCTCAGGTGA GGGNCAAGGA CAGCCTNGCA CCNCCCTTGG
  K
  AANACTCCAG NCAAGTCATT TCTTGTAAAG ACTGTGACAG AAATCTTCCC GGTGTCCTGT
  GAGCTCTTNA TNCACAGGTC ATTNTCCCTC ATTGTGCAAT GGGAGCACNG GAGACAATTT
  TCTGTGCGGT GGCAATCTTC TGGGGNGTAG TAGCCTGGGG TCAACAGTGA GGGGAGAGAG
  GGTGCCAAGA GGAAGGCAGT GTGTGTCCTG GGAGGGGATA GGGGCTCCTA NGNAAGCAGT
  CAGAACTGTT CCTGCAGAGA ANACTCGACT TTNTAANCAA TGCTCAGGCT GTCCCTGGTT
  TTGTtttgtt tnntnttttg ttttttgttt gtttgtttgt ttgtttAGGA CTGANACTTT
  AAACATTTGC TTCTTTCTGT CTGTCTATCT CNCCCNCCCT CTTTC                
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12763291	Saa2_JC7060_15	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	T	T	T	T	T	G	T	T	T	G	T
ss149179936	ENSMUSSNP2689103	ENSEMBL	ENSEMBL_Sanger	r	SNP		C		A								A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8266397					SNP	T	G	T	T	T	T	T	T	T	T	G	T	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46401173 () rs orientation: reverse

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	403 bp distal
Gm74180	predicted gene, 74180	within coordinates
Saa2	serum amyloid A 2	84 bp upstream
Tssr66700	transcription start site region 66700	83 bp upstream
Tssr66701	transcription start site region 66701	604 bp upstream
Tssr66702	transcription start site region 66702	1667 bp upstream
Tssr66703	transcription start site region 66703	1690 bp upstream
Tssr66704	transcription start site region 66704	1745 bp upstream