rs8266398 SNP Detail

Summary

• ID
  rs8266398
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46401170 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                            AAGCCAN
  GAGGTTCCAC TGAGAGGAAA CACAGCAATC AATNAGTTTC TGTGNCNNGN TCTGCNTCTC
  ACCTGGTGTC TNCTGNGCAG ATCTGGTGGT CTATGGGTNT AGGTGAGAGG AGGCANGCAT
  TTATGCTGAG CCTCCCTNCT CAGGTGAGGG NCAAGGACAG CCTNGCACCN CCCTTGGNAA
  W
  ACTCCAGNCA AGTCATTTCT TGTAAAGACT GTGACAGAAA TCTTCCCGGT GTCCTGTGAG
  CTCTTNATNC ACAGGTCATT NTCCCTCATT GTGCAATGGG AGCACNGGAG ACAATTTTCT
  GTGCGGTGGC AATCTTCTGG GGNGTAGTAG CCTGGGGTCA ACAGTGAGGG GAGAGAGGGT
  GCCAAGAGGA AGGCAGTGTG TGTCCTGGGA GGGGATAGGG GCTCCTANGN AAGCAGTCAG
  AACTGTTCCT GCAGAGAANA CTCGACTTTN TAANCAATGC TCAGGCTGTC CCTGGTTTTG
  Ttttgtttnn tnttttgttt tttgtttgtt tgtttgtttg tttAGGACTG ANACTTTAAA
  CATTTGCTTC TTTCTGTCTG TCTATCTCNC CCNCCCTCTT TC                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12763292	Saa2_JC7060_16	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	T	T	T	T	T	A	T	T	T	A	T
ss149179933	ENSMUSSNP5673738	ENSEMBL	ENSEMBL_Sanger	r	SNP		T		A								A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8266398					SNP	T	A	T	T	T	T	T	T	T	T	A	T	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46401170 () rs orientation: reverse

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	400 bp distal
Gm74180	predicted gene, 74180	within coordinates
Saa2	serum amyloid A 2	87 bp upstream
Tssr66700	transcription start site region 66700	86 bp upstream
Tssr66701	transcription start site region 66701	607 bp upstream
Tssr66702	transcription start site region 66702	1670 bp upstream
Tssr66703	transcription start site region 66703	1693 bp upstream
Tssr66704	transcription start site region 66704	1748 bp upstream