rs8266401 SNP Detail

Summary

• ID
  rs8266401
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46401101 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ATCTGCCTCT CACCTGGTGT
  CTCCTGGGCA GATCTGGTGG TCTATGGGTG TAGGTGAGAG GAGGCAGGCA TTTATGCTGA
  GCCTCCCTGC TCAGGTGAGG GGCAAGGACA GCCTGGCACC ACCCTTGGTA ATACTCCAGA
  CAAGTCATTT CTTGTAAAGA CTGTGACAGA AATCTTCCCG GTGTCCTGTG AGCTCTTTAT
  S
  CACAGGTCAT TTTCCCTCAT TGTGCAATGG GAGCACAGGA GACAATTTTC TGTGCGGTGG
  CAATCTTCTG GGGTGTAGTA GCCTGGGGTC AACAGTGAGG GGAGAGAGGG TGCCAAGAGG
  AAGGCAGTGT GTGTCCTGGG AGGGGATAGG GGCTCCTAGG AAAGCAGTCA GAACTGTTCC
  TGCAGAGAAC ACTCGACTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12763295	Saa2_JC7060_19	ROCHEBIO	RPAMM	f	SNP		C	C	C	C	C	C	C	C	C	C	C	C	G	C
ss149179926	ENSMUSSNP6904381	ENSEMBL	ENSEMBL_Sanger	r	SNP	C		G								G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8266401					SNP	G	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46401101 () rs orientation: reverse

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	331 bp distal
Gm74180	predicted gene, 74180	within coordinates
Saa2	serum amyloid A 2	156 bp upstream
Tssr66700	transcription start site region 66700	155 bp upstream
Tssr66701	transcription start site region 66701	676 bp upstream
Tssr66702	transcription start site region 66702	1739 bp upstream
Tssr66703	transcription start site region 66703	1762 bp upstream
Tssr66704	transcription start site region 66704	1817 bp upstream