rs8266402 SNP Detail

Summary

• ID
  rs8266402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46401089 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTGAG CTCTTTATCC ACAGGTCATT
  Y
  TCCCTCATTG TGCAATGGGA GCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ
ss12763296	Saa2_JC7060_20	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	T	T	T		T	T	C	T				T		T	C			T
ss48217001	NES11779518	PERLEGEN	MM_PANEL2	r	SNP				A	A		A		A	A		G	A	A	A	G		A			G	G
ss149179920	ENSMUSSNP3337268	ENSEMBL	ENSEMBL_Sanger	r	SNP		G		A									A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ
rs8266402					SNP	T	C	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48217001	NES11779518	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46401089 () rs orientation: reverse

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	319 bp distal
Gm74180	predicted gene, 74180	within coordinates
Saa2	serum amyloid A 2	168 bp upstream
Tssr66700	transcription start site region 66700	167 bp upstream
Tssr66701	transcription start site region 66701	688 bp upstream
Tssr66702	transcription start site region 66702	1751 bp upstream
Tssr66703	transcription start site region 66703	1774 bp upstream
Tssr66704	transcription start site region 66704	1829 bp upstream