rs8266409 SNP Detail

Summary

• ID
  rs8266409
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46400896 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GGTCATTTTC CCTCATTGTG
  CAATGGGAGC ACAGGAGACA ATTTTCTGTG CGGTGGCAAT CTTCTGGGGT GTAGTAGCCT
  GGGGTCAACA GTGAGGGGAG AGAGGGTGCC AAGAGGAAGG CAGTGTGTGT CCTGGGAGGG
  GATAGGGGCT CCTAGGAAAG CAGTCAGAAC TGTTCCTGCA GAGAACACTC GACTTTTTAA
  W
  CAATGCTCAG GCTGTCCCTG GTTTTGTTTT GTTTCATTTT TTGTTTTTTG TTTGTTTGTT
  TGTTTGTTTA GGACTGATAC TTTAAACATT TGCTTCTTTC TGTCTGTCTA TCTCTCCCTC
  CCTCTTTCTG TCTCTGTGCT ACCCTTTCAA GGGACCTGAG TTTTGGATTT TATACAATAA
  AATGACTAAA ACACCAACTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12763303	Saa2_JC7060_27	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8266409					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46400896 () rs orientation: reverse

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	126 bp distal
Gm74180	predicted gene, 74180	within coordinates
Saa2	serum amyloid A 2	361 bp upstream
Tssr66700	transcription start site region 66700	360 bp upstream
Tssr66701	transcription start site region 66701	881 bp upstream
Tssr66702	transcription start site region 66702	1944 bp upstream
Tssr66703	transcription start site region 66703	1967 bp upstream