rs8266413 SNP Detail

Summary

• ID
  rs8266413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46400818 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGTTT GTTTGTTTGT TTAGGACTGA
  Y
  ACTTTAAACA TTTGCTTCTT TCTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12763307	Saa2_JC7060_31	ROCHEBIO	RPAMM	f	SNP			T	T		T	T	C	T					T			C
ss24751403	Saa2_JC7060_32	ROCHEBIO	RPAMM	f	SNP			T	T		T	T	C	T					T			C
ss48216991	NES11779509	PERLEGEN	MM_PANEL2	r	SNP	G	A	A	A	A	A		G	A	A	A	G	A		G	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8266413					SNP	C	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48216991	NES11779509	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46400818 () rs orientation: reverse

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	48 bp distal
Gm74180	predicted gene, 74180	within coordinates
Rr380764	regulatory region 380764	1924 bp downstream
Saa2	serum amyloid A 2	439 bp upstream
Tssr66700	transcription start site region 66700	438 bp upstream
Tssr66701	transcription start site region 66701	959 bp upstream