rs8267231 SNP Detail

Summary

• ID
  rs8267231
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17815615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCACTAAT TCTTTATGCT
  TTTCAGTAAC TGTTTATTTT GCGCATTCTG CTCCCCGGAG AAGCTGTCAC ACAGGACAGT
  TAAGTATCAT TCACTCTTAC AAAAGCCAAA GCCAAAAGTC TGTCGCCTGT TGACTTGGGA
  GATCAGCCAT TCTGATACTC AGCAGCAACA TCACAGGAGG GTGAAATCCC TGCTTAGAGC
  W
  TGGAAAGATA TTTCTATGAA TATCTACAGT ACTAGAGAAC GGATAAGTGT GGGTTCCAAG
  GGAGCGGCCA TTCGGTCATT CGTTTCTGTG TCCTTATCTC CAAGGGCTTC ATTTACCTCA
  GCAAGGAGAG TTTTCCAACT TTCCAAGTAT GTCACCAGAG CAGAGGGGGA GAGTAATATA
  AAAAGGACCA CAGAGGAAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12764184	Pcsk5_JC7603_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8267231					SNP	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17815615 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10665	CpG island 10665	1981 bp distal
Cpgi10666	CpG island 10666	386 bp distal
Pcsk5	proprotein convertase subtilisin/kexin type 5	619 bp upstream
Rr544885	regulatory region 544885	630 bp distal
Rr544886	regulatory region 544886	654 bp distal
Rr544887	regulatory region 544887	129 bp distal
Tssr158513	transcription start site region 158513	609 bp upstream