rs8267234 SNP Detail

Summary

• ID
  rs8267234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17815659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAT CTACAGTACT AGAGAACGGA
  Y
  AAGTGTGGGT TCCAAGGGAG CGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12764187	Pcsk5_JC7603_4	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	T	T	T	C	T	T	C
ss146130722	ENSMUSSNP1401680	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T					C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8267234					SNP	T	T	T	T	T	T	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17815659 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10666	CpG island 10666	430 bp distal
Pcsk5	proprotein convertase subtilisin/kexin type 5	663 bp upstream
Rr544885	regulatory region 544885	674 bp distal
Rr544886	regulatory region 544886	698 bp distal
Rr544887	regulatory region 544887	173 bp distal
Tssr158513	transcription start site region 158513	653 bp upstream