rs8269076 SNP Detail

Summary

• ID
  rs8269076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30825631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCATGTTT ATTCCTCCTA
  AAGGTCTCTG AAGATCCCAG CAGGGCTGTA TTCCGTCGTT TTCCCACCAC TGTATGTCTC
  GCCATTACTA TTACTGTTGT TGTTTTAAAC TCCATCTGGC AGGCATTCTG TTCCTGGGAC
  TGCCTCTCTA TCTCCATCCC TTCCTGGTCT CTCCAGATCT TTCTGCTGCT CTCAAGTTTC
  Y
  CTGTTCCTGG CTCCGGTTCC TAACTCTCTC CCTCCAATGT CCCTGTCTGC CCCAGTCTGT
  CTCTCAGTTT ACCTCCACGT CCAGGGCATG CCCGGAGTCC TCACTCGGTA TCCATGCCTC
  CCGGTTCGTT TCGGGCCCCA GTCCCAGGCG CTGCCTTCCC CCACCCCTCA CGCGGCTGTG
  GGTGTCACAT TGCAGCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	LG/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss12766188	Scn1b_1_JC6490_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T		C	T		T
ss322139528	CHEV_7_31911225	CHEVERUD	SCREENING_POP	f	SNP						C			T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	LG/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs8269076					SNP	T	T	T	T	T	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30825631 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	781 bp distal
Cpgi18837	CpG island 18837	within coordinates
Rr645025	regulatory region 645025	within coordinates
Rr645026	regulatory region 645026	628 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	510 bp downstream
Tssr71936	transcription start site region 71936	553 bp downstream
Tssr71937	transcription start site region 71937	715 bp downstream
Tssr71938	transcription start site region 71938	744 bp downstream
Tssr71939	transcription start site region 71939	787 bp downstream
Tssr71940	transcription start site region 71940	958 bp downstream