rs8269079 SNP Detail

Summary

• ID
  rs8269079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30825750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCATTCT GTTCCTGGGA
  CTGCCTCTCT ATCTCCATCC CTTCCTGGTC TCTCCAGATC TTTCTGCTGC TCTCAAGTTT
  CTCTGTTCCT GGCTCCGGTT CCTAACTCTC TCCCTCCAAT GTCCCTGTCT GCCCCAGTCT
  GTCTCTCAGT TTACCTCCAC GTCCAGGGCA TGCCCGGAGT CCTCACTCGG TATCCATGCC
  Y
  CCCGGTTCGT TTCGGGCCCC AGTCCCAGGC GCTGCCTTCC CCCACCCCTC ACGCGGCTGT
  GGGTGTCACA TTGCAGCCTG CGGGGCTCTG CAAGCAGCTG ACTCCGCGTC TCCTCGCCCC
  CGGCCCGGCG CCCGCGGCGG CACCTCTGTA CCAAGTGTCC CTCCACACCC CCCCGAGAAA
  CCCTTGCATC TCCACGATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12766191	Scn1b_1_JC6490_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8269079					SNP	C	C	C	C	T	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30825750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	900 bp distal
Cpgi18837	CpG island 18837	within coordinates
Rr645025	regulatory region 645025	within coordinates
Rr645026	regulatory region 645026	509 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	391 bp downstream
Tssr71936	transcription start site region 71936	434 bp downstream
Tssr71937	transcription start site region 71937	596 bp downstream
Tssr71938	transcription start site region 71938	625 bp downstream
Tssr71939	transcription start site region 71939	668 bp downstream
Tssr71940	transcription start site region 71940	839 bp downstream