rs8269116 SNP Detail

Summary

• ID
  rs8269116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30824430 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGCAC ACAGGTATGG GGTGGAGCCA
  R
  CAGCACTGGG TCTCAGGGTT GTTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss12766228	Scn1b_2_JC6494_1	ROCHEBIO	RPAMM	f	SNP				G		G	G	G		G	G		A
ss24753587	Scn1b_2_JC6495_1	ROCHEBIO	RPAMM	r	SNP	C	C	C		C	C	C		C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs8269116					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30824430 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	111 bp proximal
Cpgi18837	CpG island 18837	1189 bp proximal
Rr645025	regulatory region 645025	851 bp proximal
Rr645026	regulatory region 645026	1829 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	1711 bp downstream
Tssr71936	transcription start site region 71936	1754 bp downstream
Tssr71937	transcription start site region 71937	1916 bp downstream
Tssr71938	transcription start site region 71938	1945 bp downstream
Tssr71939	transcription start site region 71939	1988 bp downstream