rs8269117 SNP Detail

Summary

• ID
  rs8269117
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30824238 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TGGAGCCAGC AGCACTGGGT
  CTCAGGGTTG TTTGTTTGCT TGGGTATTGC TTTTAGTGCT GTTGAGAAAG GGTGTTGCTA
  AGTAGCTTGG TCTGGTTTCT AACTCTTGTC AATCCTCTTG CCTCGGCTTC TTGAGTGCTG
  GGATTACAGA CATGCGATTG GCTTGTCTGA GTGCATTGCT AATGATGAGG ATGTGATACG
  S
  TGGATGACCT GGATTTAGAG CACCACAGAC TGCTGACCAC CTTAGGCAAG GCACAGAGCA
  CATGTCCCCA GTGAGGGGGC ATGGTCGCTA CTCCATAATT TTAGGTCACT ACATTTATTT
  TTAGAGTATG TGTGTGTGTG TACATGCCAT GGCGTGTGTA TGGAGGTTAG AAGACAAGTT
  GAAGAAGTCC ATTCTGTCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12766229	Scn1b_2_JC6494_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8269117					SNP	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30824238 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	303 bp proximal
Cpgi18837	CpG island 18837	1381 bp proximal
Rr645025	regulatory region 645025	1043 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	1903 bp downstream
Tssr71936	transcription start site region 71936	1946 bp downstream