rs8269120 SNP Detail

Summary

• ID
  rs8269120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30824522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATTGAC AAGAGTTAGA
  AACCAGACCA AGCTACTTAG CAACACCCTT TCTCAACAGC ACTAAAAGCA ATACCCAAGC
  AAACAAACAA CCCTGAGACC CAGTGCTGCT GGCTCCACCC CATACCTGTG TGCTAGCCCA
  GCCTAGGCAC CCACACACCT TGACAAATTC CTCTGTCCCC TTCTGGCGGA AGGTCCACTC
  Y
  GTGAAGGTTT CGGCGGTGGT CTCACTACGA CGCTTACAGG AGATGCACAG GATTTTGAAG
  GTCATCCCAT ACACAGCCTC GGTATCGGAA TCCACCTCCA CGCAGCCCCC CCAGGCTGAG
  GATACTGCGG ACACAGTGGA CTCCGGTTAT CGAGGCGCCT GCCACCCGAG GCAACACCGG
  GCTTGCTGCC CCACGGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12766232	Scn1b_2_JC6495_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8269120					SNP	C	C	C	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30824522 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	19 bp proximal
Cpgi18837	CpG island 18837	1097 bp proximal
Rr645025	regulatory region 645025	759 bp proximal
Rr645026	regulatory region 645026	1737 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	1619 bp downstream
Tssr71936	transcription start site region 71936	1662 bp downstream
Tssr71937	transcription start site region 71937	1824 bp downstream
Tssr71938	transcription start site region 71938	1853 bp downstream
Tssr71939	transcription start site region 71939	1896 bp downstream