rs8269125 SNP Detail

Summary

• ID
  rs8269125
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30824673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACCTT GACAAATTCC
  TCTGTCCCCT TCTGGCGGAA GGTCCACTCC GTGAAGGTTT CGGCGGTGGT CTCACTACGA
  CGCTTACAGG AGATGCACAG GATTTTGAAG GTCATCCCAT ACACAGCCTC GGTATCGGAA
  TCCACCTCCA CGCAGCCCCC CCAGGCTGAG GATACTGCGG ACACAGTGGA CTCCGGTTAT
  M
  GAGGCGCCTG CCACCCGAGG CAACACCGGG CTTGCTGCCC CACGGAAACC ATCTGTTTCC
  TCTCCACCCT TATTACCAAC AGTGGATGCC AAACCTGTCC CTGCTTCTCA CTCCCTGTGT
  GACCTTGACG AGTCACCCAT CTCCTGAGAG CCTCAGTTTT CCACCTGCCT TTCCCCTAGC
  CTGTTAGGTG GAAGAATCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss12766237	Scn1b_2_JC6495_7	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	A		C	C		C
ss24753588	Scn1b_2_JC6495_8	ROCHEBIO	RPAMM	f	SNP					C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs8269125					SNP	C	C	C	C	C	C	A	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30824673 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	within coordinates
Cpgi18837	CpG island 18837	946 bp proximal
Rr645025	regulatory region 645025	608 bp proximal
Rr645026	regulatory region 645026	1586 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	1468 bp downstream
Tssr71936	transcription start site region 71936	1511 bp downstream
Tssr71937	transcription start site region 71937	1673 bp downstream
Tssr71938	transcription start site region 71938	1702 bp downstream
Tssr71939	transcription start site region 71939	1745 bp downstream
Tssr71940	transcription start site region 71940	1916 bp downstream