rs8269126 SNP Detail

Summary

• ID
  rs8269126
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30824966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGTCCCT GCTTCTCACT
  CCCTGTGTGA CCTTGACGAG TCACCCATCT CCTGAGAGCC TCAGTTTTCC ACCTGCCTTT
  CCCCTAGCCT GTTAGGTGGA AGAATCTGTC ATCTTTATTC CCAGTAGTTG CTAAGTAGAA
  TACACACACT GGAGGCCCTG GGAAAGAGGA TGTCACTGTG GTGAGTAACT CCACTGAAGT
  R
  CCCAGGTCCT CAAAAAGCCA ACAGCCTTCT AAGTGGTGGC TCTAGCATTA AATGTCACTC
  CCACCATGAA AGAGGTCTGC AGAGCCAGTC GTGGGTTGAG AGATAGGAAG GTTGGGTGAG
  GGGGTTCACT CTAGCTCTGT TTCTTTCTTC CCCTAGCTTC TGTGTTGGAA TCCATCCCCT
  CCCGATCTTC ACCATCTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss12766238	Scn1b_2_JC6496_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G		A	G		G
ss322139522	CHEV_7_31910560	CHEVERUD	SCREENING_POP	f	SNP								A			G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs8269126					SNP	G	G	G	G	G	G	G	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30824966 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	116 bp distal
Cpgi18837	CpG island 18837	653 bp proximal
Rr645025	regulatory region 645025	315 bp proximal
Rr645026	regulatory region 645026	1293 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	1175 bp downstream
Tssr71936	transcription start site region 71936	1218 bp downstream
Tssr71937	transcription start site region 71937	1380 bp downstream
Tssr71938	transcription start site region 71938	1409 bp downstream
Tssr71939	transcription start site region 71939	1452 bp downstream
Tssr71940	transcription start site region 71940	1623 bp downstream