rs8269127 SNP Detail

Summary

• ID
  rs8269127
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30824982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTG AAGTGCCCAG GTCCTCAAAA
  W
  GCCAACAGCC TTCTAAGTGG TGGCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12766239	Scn1b_2_JC6496_2	ROCHEBIO	RPAMM	f	SNP		T	T	T	T	A	A	A		A	A	A
ss45995719	mCV24561329	ABI	CRAMUS_MOUSE	f	SNP	A		T				A		A
ss148700222	ENSMUSSNP3332038	ENSEMBL	ENSEMBL_Sanger	f	SNP			T						A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8269127					SNP	A	T	T	T	T	A	A	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30824982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	132 bp distal
Cpgi18837	CpG island 18837	637 bp proximal
Rr645025	regulatory region 645025	299 bp proximal
Rr645026	regulatory region 645026	1277 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	1159 bp downstream
Tssr71936	transcription start site region 71936	1202 bp downstream
Tssr71937	transcription start site region 71937	1364 bp downstream
Tssr71938	transcription start site region 71938	1393 bp downstream
Tssr71939	transcription start site region 71939	1436 bp downstream
Tssr71940	transcription start site region 71940	1607 bp downstream