rs8269128 SNP Detail

Summary

• ID
  rs8269128
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30825040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTTCCCC TAGCCTGTTA
  GGTGGAAGAA TCTGTCATCT TTATTCCCAG TAGTTGCTAA GTAGAATACA CACACTGGAG
  GCCCTGGGAA AGAGGATGTC ACTGTGGTGA GTAACTCCAC TGAAGTGCCC AGGTCCTCAA
  AAAGCCAACA GCCTTCTAAG TGGTGGCTCT AGCATTAAAT GTCACTCCCA CCATGAAAGA
  K
  GTCTGCAGAG CCAGTCGTGG GTTGAGAGAT AGGAAGGTTG GGTGAGGGGG TTCACTCTAG
  CTCTGTTTCT TTCTTCCCCT AGCTTCTGTG TTGGAATCCA TCCCCTCCCG ATCTTCACCA
  TCTTGCCCTG TCCCCTCTTC CGCAGACTCA CTTCCTCGCT TCAAGACCTT CACCCCAAGT
  TAAAAGTTCT TTGCTTCACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss12766240	Scn1b_2_JC6496_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G			G	G		T
ss24747493	Scn1b_2_JC6496_4	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs8269128					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30825040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	190 bp distal
Cpgi18837	CpG island 18837	579 bp proximal
Rr645025	regulatory region 645025	241 bp proximal
Rr645026	regulatory region 645026	1219 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	1101 bp downstream
Tssr71936	transcription start site region 71936	1144 bp downstream
Tssr71937	transcription start site region 71937	1306 bp downstream
Tssr71938	transcription start site region 71938	1335 bp downstream
Tssr71939	transcription start site region 71939	1378 bp downstream
Tssr71940	transcription start site region 71940	1549 bp downstream