rs8269129 SNP Detail

Summary

• ID
  rs8269129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30817142 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             ACCTAAATGG CCCCAGCCCT CCCTACCAGC CCCACTCACG CGTTCTCTTG
  R
  GCAGCAGCCT CCGTAGCAGC AGCAATCTTC TTGTAGCAGT ACACCATCTC           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss12766241	Scn1b_3_JC6501_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A				A	G		G
ss24753590	Scn1b_3_JC6501_2	ROCHEBIO	RPAMM	r	SNP	T	T	T	T	T	T	T	T		T	T	T	C	C	C
ss46019496	mCV24562034	ABI	CRAMUS_MOUSE	r	SNP		T					T		C
ss148699946	ENSMUSSNP1235894	ENSEMBL	ENSEMBL_Sanger	r	SNP		T							C
ss322139451	CHEV_7_31902736	CHEVERUD	SCREENING_POP	r	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs8269129					SNP	A	A	A	A	A	A	A	A	G	A	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30817142 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	1593 bp distal
Rr645022	regulatory region 645022	1937 bp distal
Rr645023	regulatory region 645023	464 bp distal
Rr645024	regulatory region 645024	784 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71934	transcription start site region 71934	813 bp upstream