rs8269131 SNP Detail

Summary

• ID
  rs8269131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30817476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCAGGG CATGGTTAAG
  GAGGCGGCAG AGGCCCTAGC TCAGGGAGAT ACAACAGCCC TCACTGTGGA AGTATGCTTG
  CTTGTGTGAG CTCGGGCAAG TGGTTCAACC TCTCTGAGCT TGGGCCACAA ACAACGTAAC
  CATGTTGGTT TCTAGAGGTA TTACAGTTTA CTCTGATAGT GGCAAGGTGC TTGGATAGGT
  Y
  TAGGGCCAGG GTGCTTCAGA TGTGGTATCT GTGACATTCA GGAGGATGGG GACTGGGGGG
  CCGGGGGGGG GGAACTACAG TCTGTAATTT GACAAATCAA TACCCTTGAG TTTAAATCTG
  ACCTCTGCCA GCTGTGTGAC TTTGAGAAAA TGACTAAGGT TCTCTGGGCC TCCATTGCCT
  CCAACAGCAG AAATAGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12766243	Scn1b_3_JC6502_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8269131					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30817476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	1927 bp distal
Rr645023	regulatory region 645023	798 bp distal
Rr645024	regulatory region 645024	450 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71934	transcription start site region 71934	1147 bp upstream