rs8269136 SNP Detail

Summary

• ID
  rs8269136
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4524573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAGACTT TTTCTGCCAA
  GGTGATATGG AGAAAGGTCA GTGTGAGGTC CCAAAGTGGA CACTGGGTGG AGCTGCAAGG
  CATCACGACC CACTCGAGTG CATACCCATT CGGGTCAGAC ATTCTTCAAC CAGAACGCGG
  AGTCCACTGG AAGCCACGCT CCTCGGTCCC ATCTACCAAT CTTTGTCTCC GACTAGAGCT
  W
  CGCACTGCCT ATCTATTCAC TGCTAACCAC TACGCTCACG CCTAAACCTT GCTGTAGGCA
  AGTTCCCCCC AACCACAGGC CGCTGTCACC AAGCCCAACC TGAACCTTTC TGAAATTCTG
  CCCCACCCAT AGGGCTCTGC CCATCACCCT ACCACCCCTT TCCAGGGCCT TGGTCCTGCC
  CCCTTCTGGG TCTCAGAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12766248	Tnni3_1_JC6504_3	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8269136					SNP	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4524573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	within coordinates
Dnaaf3	dynein, axonemal assembly factor 3	1359 bp downstream
Rr641975	regulatory region 641975	124 bp distal
Rr641976	regulatory region 641976	944 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64335	transcription start site region 64335	1092 bp downstream
Tssr64336	transcription start site region 64336	96 bp upstream
Tssr64337	transcription start site region 64337	239 bp upstream
Tssr70484	transcription start site region 70484	302 bp downstream
Tssr70485	transcription start site region 70485	853 bp downstream
Tssr70486	transcription start site region 70486	1225 bp downstream
Tssr70487	transcription start site region 70487	1242 bp downstream