rs8269138 SNP Detail

Summary

• ID
  rs8269138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4524759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGACTAG AGCTACGCAC
  TGCCTATCTA TTCACTGCTA ACCACTACGC TCACGCCTAA ACCTTGCTGT AGGCAAGTTC
  CCCCCAACCA CAGGCCGCTG TCACCAAGCC CAACCTGAAC CTTTCTGAAA TTCTGCCCCA
  CCCATAGGGC TCTGCCCATC ACCCTACCAC CCCTTTCCAG GGCCTTGGTC CTGCCCCCTT
  Y
  TGGGTCTCAG AGGATTCTTG AACCCAGAAG CCCATCCTCT TGGACCCCGC CCCACCTTGG
  CGTGTGGCTC GGTGGCATAG GCTCGGTAGT TGGCAGAGGA GCGGCGTCGG ACAGGAGCAG
  GCGCAGGCTG CGGTTCCCCA GCCTGGAATT GAAGCAGGCT ACATCACTAC CCAAACCCTC
  CCATCCAGCC CTTCCTGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss12766250	Tnni3_1_JC6504_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	T			C	C		C
ss24747495	Tnni3_1_JC6504_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs8269138					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4524759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	within coordinates
Dnaaf3	dynein, axonemal assembly factor 3	1173 bp downstream
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64335	transcription start site region 64335	1278 bp downstream
Tssr64336	transcription start site region 64336	84 bp downstream
Tssr64337	transcription start site region 64337	53 bp upstream
Tssr70484	transcription start site region 70484	116 bp downstream
Tssr70485	transcription start site region 70485	667 bp downstream
Tssr70486	transcription start site region 70486	1039 bp downstream
Tssr70487	transcription start site region 70487	1056 bp downstream