rs8269142 SNP Detail

Summary

• ID
  rs8269142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4524429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGCGCACG TGGGGGGGGG
  GGGCGGGGGA GGCGGGGACT GACACACTCC GGAAGCGAAA CCACTCCCCC AAAGCTCCGC
  CCACCCAAGC CCACCCACTG CGACCTCATC ATCACCTTCA ACTGAAGTTT TCTGGAGGCG
  GAGATCTTAG ACTTTTTCTG CCAAGGTGAT ATGGAGAAAG GTCAGTGTGA GGTCCCAAAG
  Y
  GGACACTGGG TGGAGCTGCA AGGCATCACG ACCCACTCGA GTGCATACCC ATTCGGGTCA
  GACATTCTTC AACCAGAACG CGGAGTCCAC TGGAAGCCAC GCTCCTCGGT CCCATCTACC
  AATCTTTGTC TCCGACTAGA GCTACGCACT GCCTATCTAT TCACTGCTAA CCACTACGCT
  CACGCCTAAA CCTTGCTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12766254	Tnni3_1_JC6506_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8269142					SNP	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4524429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	97 bp proximal
Dnaaf3	dynein, axonemal assembly factor 3	1503 bp downstream
Rr641975	regulatory region 641975	within coordinates
Rr641976	regulatory region 641976	1088 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64335	transcription start site region 64335	948 bp downstream
Tssr64336	transcription start site region 64336	240 bp upstream
Tssr64337	transcription start site region 64337	383 bp upstream
Tssr70484	transcription start site region 70484	446 bp downstream
Tssr70485	transcription start site region 70485	997 bp downstream
Tssr70486	transcription start site region 70486	1369 bp downstream
Tssr70487	transcription start site region 70487	1386 bp downstream