rs8269144 SNP Detail

Summary

• ID
  rs8269144
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4524490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCCCCCA AAGCTCCGCC
  CACCCAAGCC CACCCACTGC GACCTCATCA TCACCTTCAA CTGAAGTTTT CTGGAGGCGG
  AGATCTTAGA CTTTTTCTGC CAAGGTGATA TGGAGAAAGG TCAGTGTGAG GTCCCAAAGT
  GGACACTGGG TGGAGCTGCA AGGCATCACG ACCCACTCGA GTGCATACCC ATTCGGGTCA
  S
  ACATTCTTCA ACCAGAACGC GGAGTCCACT GGAAGCCACG CTCCTCGGTC CCATCTACCA
  ATCTTTGTCT CCGACTAGAG CTACGCACTG CCTATCTATT CACTGCTAAC CACTACGCTC
  ACGCCTAAAC CTTGCTGTAG GCAAGTTCCC CCCAACCACA GGCCGCTGTC ACCAAGCCCA
  ACCTGAACCT TTCTGAAATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12766256	Tnni3_1_JC6506_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8269144					SNP	G	G	G	G	G	G	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4524490 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	36 bp proximal
Dnaaf3	dynein, axonemal assembly factor 3	1442 bp downstream
Rr641975	regulatory region 641975	41 bp distal
Rr641976	regulatory region 641976	1027 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64335	transcription start site region 64335	1009 bp downstream
Tssr64336	transcription start site region 64336	179 bp upstream
Tssr64337	transcription start site region 64337	322 bp upstream
Tssr70484	transcription start site region 70484	385 bp downstream
Tssr70485	transcription start site region 70485	936 bp downstream
Tssr70486	transcription start site region 70486	1308 bp downstream
Tssr70487	transcription start site region 70487	1325 bp downstream