rs8269673 SNP Detail

Summary

• ID
  rs8269673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164674507 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                ACA
  CCTGCTAGGA CCCCACAGCC AGCTAATAAG GCCTTGCAAC TAGTTTTGAA GATGCACGGT
  Y
  TGCCTTGGGC ACCAGCTTGT GATTTTACGC ACATCACACC TTGGCTGTGG GCCCGCCTGG
  TATATTCATC TCCCCTAGTT GACTGAGACA CCCTGCAGGT TCCTTTTGGT TTGGACGATG
  TGGATGTGGG CTTTTAAAAa aatatttatt gccgggtgtg gtggcacacg cctttgatcc
  cagcactcgg gaggcagagg caggcggatt tctgagttcg aggccagcct ggtctacaaa
  gngagttcca ggacaTGCCT TGGGCACCAG CTTGTGATTT TACGCACATC ACACCTTGGC
  TGTGGGCCCG CCTGGTATAT TCATCTCCCC TAGTTGACTG AGACACCCTG CAGGTTCCTT
  TTGGTTTGGA CGATGTGGAT GTGGGCTTTT AAAAaaatat ttattgccgg gtgtggtggc
  acacgccttt gatcccagca ctcgggaggc agaggcaggc ggatttctga gttcgaggcc
  agcctggtct acaaagngag ttccaggaca GCA                             
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ	MRL/MpJ	NZB/BlNJ	NZW/Lac
ss12766824	Ppgb_JC7728_1	ROCHEBIO	RPAMM	f	SNP	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ	MRL/MpJ	NZB/BlNJ	NZW/Lac
rs8269673					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164674507 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	125 bp proximal
Ctsa	cathepsin A	286 bp upstream
Neurl2	neuralized E3 ubiquitin protein ligase 2	within coordinates
Rr367364	regulatory region 367364	1175 bp upstream
Rr397479	regulatory region 397479	1084 bp downstream
Tssr21656	transcription start site region 21656	275 bp upstream
Tssr21657	transcription start site region 21657	294 bp upstream
Tssr21658	transcription start site region 21658	372 bp upstream
Tssr21659	transcription start site region 21659	1179 bp upstream
Tssr21660	transcription start site region 21660	1194 bp upstream
Tssr21661	transcription start site region 21661	1254 bp upstream
Tssr21662	transcription start site region 21662	1428 bp upstream
Tssr21663	transcription start site region 21663	1489 bp upstream
Tssr21664	transcription start site region 21664	1520 bp upstream
Tssr27546	transcription start site region 27546	851 bp downstream