rs8269674 SNP Detail

Summary

• ID
  rs8269674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164674265 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTCGA GGCCAGCCTG GTCTACAAAG
  Y
  GAGTTCCAGG ACAGCCAGGG CTATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZW/Lac
ss12766825	Ppgb_JC7728_2	ROCHEBIO	RPAMM	f	SNP	T			C	C	C	C	C			C	C
ss45296691	mCV23739720	ABI	CRAMUS_MOUSE	r	SNP		A	A		G				G	G
ss148232101	ENSMUSSNP1784509	ENSEMBL	ENSEMBL_Sanger	r	SNP			A		G					G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZW/Lac
rs8269674					SNP	T	T	T	C	C	C	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164674265 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	367 bp proximal
Ctsa	cathepsin A	528 bp upstream
Neurl2	neuralized E3 ubiquitin protein ligase 2	Intron
Rr367364	regulatory region 367364	1417 bp upstream
Rr397479	regulatory region 397479	842 bp downstream
Rr569727	regulatory region 569727	956 bp distal
Rr569728	regulatory region 569728	96 bp distal
Rr569729	regulatory region 569729	104 bp proximal
Rr569730	regulatory region 569730	1101 bp proximal
Tssr21656	transcription start site region 21656	517 bp upstream
Tssr21657	transcription start site region 21657	536 bp upstream
Tssr21658	transcription start site region 21658	614 bp upstream
Tssr21659	transcription start site region 21659	1421 bp upstream
Tssr21660	transcription start site region 21660	1436 bp upstream
Tssr21661	transcription start site region 21661	1496 bp upstream
Tssr21662	transcription start site region 21662	1670 bp upstream
Tssr21663	transcription start site region 21663	1731 bp upstream
Tssr21664	transcription start site region 21664	1762 bp upstream
Tssr27546	transcription start site region 27546	1093 bp downstream