TTCGA GGCCAGCCTG GTCTACAAAG Y GAGTTCCAGG ACAGCCAGGG CTATA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129/Sv |
129S1/SvImJ |
129X1/SvJ |
A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cJ |
C57BL/6J |
DBA/2J |
MRL/MpJ |
NZW/Lac |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss12766825 | Ppgb_JC7728_2 | ROCHEBIO | RPAMM | f | SNP | T | C | C | C | C | C | C | C | ||||
ss45296691 | mCV23739720 | ABI | CRAMUS_MOUSE | r | SNP | A | A | G | G | G | |||||||
ss148232101 | ENSMUSSNP1784509 | ENSEMBL | ENSEMBL_Sanger | r | SNP | A | G | G | |||||||||
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | 129/Sv |
129S1/SvImJ |
129X1/SvJ |
A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cJ |
C57BL/6J |
DBA/2J |
MRL/MpJ |
NZW/Lac |
||||
rs8269674 | SNP | T | T | T | C | C | C | C | C | C | C | C | C |
Location: Chr2:164674265 () rs orientation: reverse | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi12674 | CpG island 12674 | 367 bp proximal | ||||||
Ctsa | cathepsin A | 528 bp upstream | ||||||
Neurl2 | neuralized E3 ubiquitin protein ligase 2 | within coordinates | ||||||
Rr367364 | regulatory region 367364 | 1417 bp upstream | ||||||
Rr397479 | regulatory region 397479 | 842 bp downstream | ||||||
Rr569727 | regulatory region 569727 | 956 bp distal | ||||||
Rr569728 | regulatory region 569728 | 96 bp distal | ||||||
Rr569729 | regulatory region 569729 | 104 bp proximal | ||||||
Rr569730 | regulatory region 569730 | 1101 bp proximal | ||||||
Tssr21656 | transcription start site region 21656 | 517 bp upstream | ||||||
Tssr21657 | transcription start site region 21657 | 536 bp upstream | ||||||
Tssr21658 | transcription start site region 21658 | 614 bp upstream | ||||||
Tssr21659 | transcription start site region 21659 | 1421 bp upstream | ||||||
Tssr21660 | transcription start site region 21660 | 1436 bp upstream | ||||||
Tssr21661 | transcription start site region 21661 | 1496 bp upstream | ||||||
Tssr21662 | transcription start site region 21662 | 1670 bp upstream | ||||||
Tssr21663 | transcription start site region 21663 | 1731 bp upstream | ||||||
Tssr21664 | transcription start site region 21664 | 1762 bp upstream | ||||||
Tssr27546 | transcription start site region 27546 | 1093 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 12/17/2024 MGI 6.24 |
![]() |
|