About   Help   FAQ
rs8269674 SNP Detail
Summary
  • ID
    rs8269674
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:164674265 (GRCm39)
  • SNP Orientation to the Genome
    reverse
  • SNP Reference Flanking Sequence
                                          TTCGA GGCCAGCCTG GTCTACAAAG
    Y
    GAGTTCCAGG ACAGCCAGGG CTATA                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129/Sv
129S1/SvImJ
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cJ
C57BL/6J
DBA/2J
MRL/MpJ
NZW/Lac
ss12766825 Ppgb_JC7728_2 ROCHEBIO RPAMM f SNP T C C C C C C C
ss45296691 mCV23739720 ABI CRAMUS_MOUSE r SNP A A G G G
ss148232101 ENSMUSSNP1784509 ENSEMBL ENSEMBL_Sanger r SNP A G G
SNP Consensus Information
SNP Consensus Type
129/Sv
129S1/SvImJ
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cJ
C57BL/6J
DBA/2J
MRL/MpJ
NZW/Lac
rs8269674 SNP T T T C C C C C C C C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:164674265 () rs orientation: reverse
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12674 CpG island 12674 367 bp proximal
Ctsa cathepsin A 528 bp upstream
Neurl2 neuralized E3 ubiquitin protein ligase 2 within coordinates
Rr367364 regulatory region 367364 1417 bp upstream
Rr397479 regulatory region 397479 842 bp downstream
Rr569727 regulatory region 569727 956 bp distal
Rr569728 regulatory region 569728 96 bp distal
Rr569729 regulatory region 569729 104 bp proximal
Rr569730 regulatory region 569730 1101 bp proximal
Tssr21656 transcription start site region 21656 517 bp upstream
Tssr21657 transcription start site region 21657 536 bp upstream
Tssr21658 transcription start site region 21658 614 bp upstream
Tssr21659 transcription start site region 21659 1421 bp upstream
Tssr21660 transcription start site region 21660 1436 bp upstream
Tssr21661 transcription start site region 21661 1496 bp upstream
Tssr21662 transcription start site region 21662 1670 bp upstream
Tssr21663 transcription start site region 21663 1731 bp upstream
Tssr21664 transcription start site region 21664 1762 bp upstream
Tssr27546 transcription start site region 27546 1093 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory