rs8269675 SNP Detail

Summary

• ID
  rs8269675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164674963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCTCACG GGGGCAGAAG
  AGAACACCCA AGCGGCTTCG GCGCGCTGTA GGAGGCAGCA CGTTTTGTTC ATAGAGCTGA
  TCTAAGAGGT GGCTATAAAG CCCTGGCCGG CTGCGGCCCA CCAGACGGTC CCGGGGAATT
  CGGAACTGCT CGATGCGCAG ATAGGGTTCA ACCAGTAGGG CTTGGGGACC ACTGGGGACC
  R
  CTGCCTCCGC TTCTGGTTGA CCTTCCCGGG GCACACGGTT GTGGTGGCGT GTGATAGCGA
  AGACCCAACT GTGGCCAAGG CTGACCAAGT CAGGCAGTGA AAACTCGGGT ACAGCGGCCA
  GACTGGCGGG ATCCAGAGCG GTCAGGCCAA GACGTAAGTG CCCGCACCAG CCCAGCTCTT
  TTTCCTCAAT TTCCACTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12766826	Ppgb_JC7729_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8269675					SNP	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164674963 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12674	CpG island 12674			within coordinates
Ctsa	cathepsin A			mRNA-UTR
				Noncoding-Transcript-Variant
Neurl2	neuralized E3 ubiquitin protein ligase 2			Coding-NonSynonymous
Rr367364	regulatory region 367364			719 bp upstream
Rr397479	regulatory region 397479			1540 bp downstream
Rr569727	regulatory region 569727			1654 bp distal
Rr569728	regulatory region 569728			794 bp distal
Rr569729	regulatory region 569729			132 bp distal
Rr569730	regulatory region 569730			403 bp proximal
Tssr21656	transcription start site region 21656			165 bp downstream
Tssr21657	transcription start site region 21657			108 bp downstream
Tssr21658	transcription start site region 21658			73 bp downstream
Tssr21659	transcription start site region 21659			723 bp upstream
Tssr21660	transcription start site region 21660			738 bp upstream
Tssr21661	transcription start site region 21661			798 bp upstream
Tssr21662	transcription start site region 21662			972 bp upstream
Tssr21663	transcription start site region 21663			1033 bp upstream
Tssr21664	transcription start site region 21664			1064 bp upstream
Tssr21665	transcription start site region 21665			1820 bp upstream
Tssr27546	transcription start site region 27546			395 bp downstream