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rs8269675 SNP Detail
Summary
  • ID
    rs8269675
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:164674963 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATCCTCACG GGGGCAGAAG
    AGAACACCCA AGCGGCTTCG GCGCGCTGTA GGAGGCAGCA CGTTTTGTTC ATAGAGCTGA
    TCTAAGAGGT GGCTATAAAG CCCTGGCCGG CTGCGGCCCA CCAGACGGTC CCGGGGAATT
    CGGAACTGCT CGATGCGCAG ATAGGGTTCA ACCAGTAGGG CTTGGGGACC ACTGGGGACC
    R
    CTGCCTCCGC TTCTGGTTGA CCTTCCCGGG GCACACGGTT GTGGTGGCGT GTGATAGCGA
    AGACCCAACT GTGGCCAAGG CTGACCAAGT CAGGCAGTGA AAACTCGGGT ACAGCGGCCA
    GACTGGCGGG ATCCAGAGCG GTCAGGCCAA GACGTAAGTG CCCGCACCAG CCCAGCTCTT
    TTTCCTCAAT TTCCACTAGA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129/Sv
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cJ
MRL/MpJ
NZB/BlNJ
NZW/Lac
SPRET/EiJ
ss12766826 Ppgb_JC7729_1 ROCHEBIO RPAMM f SNP G G G G G G G G G A
SNP Consensus Information
SNP Consensus Type
129/Sv
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cJ
MRL/MpJ
NZB/BlNJ
NZW/Lac
SPRET/EiJ
rs8269675 SNP G G G G G G G G G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:164674963 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12674 CpG island 12674 within coordinates
Ctsa cathepsin A within coordinates
Neurl2 neuralized E3 ubiquitin protein ligase 2 within coordinates
Rr367364 regulatory region 367364 719 bp upstream
Rr397479 regulatory region 397479 1540 bp downstream
Tssr21656 transcription start site region 21656 165 bp downstream
Tssr21657 transcription start site region 21657 108 bp downstream
Tssr21658 transcription start site region 21658 73 bp downstream
Tssr21659 transcription start site region 21659 723 bp upstream
Tssr21660 transcription start site region 21660 738 bp upstream
Tssr21661 transcription start site region 21661 798 bp upstream
Tssr21662 transcription start site region 21662 972 bp upstream
Tssr21663 transcription start site region 21663 1033 bp upstream
Tssr21664 transcription start site region 21664 1064 bp upstream
Tssr21665 transcription start site region 21665 1820 bp upstream
Tssr27546 transcription start site region 27546 395 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory