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rs8269676 SNP Detail
Summary
  • ID
    rs8269676
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:164674967 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCACGGGGG CAGAAGAGAA
    CACCCAAGCG GCTTCGGCGC GCTGTAGGAG GCAGCACGTT TTGTTCATAG AGCTGATCTA
    AGAGGTGGCT ATAAAGCCCT GGCCGGCTGC GGCCCACCAG ACGGTCCCGG GGAATTCGGA
    ACTGCTCGAT GCGCAGATAG GGTTCAACCA GTAGGGCTTG GGGACCACTG GGGACCGCTG
    Y
    CTCCGCTTCT GGTTGACCTT CCCGGGGCAC ACGGTTGTGG TGGCGTGTGA TAGCGAAGAC
    CCAACTGTGG CCAAGGCTGA CCAAGTCAGG CAGTGAAAAC TCGGGTACAG CGGCCAGACT
    GGCGGGATCC AGAGCGGTCA GGCCAAGACG TAAGTGCCCG CACCAGCCCA GCTCTTTTTC
    CTCAATTTCC ACTAGAAATA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129/Sv
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cJ
MRL/MpJ
NZB/BlNJ
NZW/Lac
SPRET/EiJ
ss12766827 Ppgb_JC7729_2 ROCHEBIO RPAMM f SNP C C C C C C C C C T
SNP Consensus Information
SNP Consensus Type
129/Sv
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cJ
MRL/MpJ
NZB/BlNJ
NZW/Lac
SPRET/EiJ
rs8269676 SNP C C C C C C C C C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:164674967 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12674 CpG island 12674 within coordinates
Ctsa cathepsin A within coordinates
Neurl2 neuralized E3 ubiquitin protein ligase 2 within coordinates
Rr367364 regulatory region 367364 715 bp upstream
Rr397479 regulatory region 397479 1544 bp downstream
Tssr21656 transcription start site region 21656 169 bp downstream
Tssr21657 transcription start site region 21657 112 bp downstream
Tssr21658 transcription start site region 21658 77 bp downstream
Tssr21659 transcription start site region 21659 719 bp upstream
Tssr21660 transcription start site region 21660 734 bp upstream
Tssr21661 transcription start site region 21661 794 bp upstream
Tssr21662 transcription start site region 21662 968 bp upstream
Tssr21663 transcription start site region 21663 1029 bp upstream
Tssr21664 transcription start site region 21664 1060 bp upstream
Tssr21665 transcription start site region 21665 1816 bp upstream
Tssr27546 transcription start site region 27546 391 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory