rs8269676 SNP Detail

Summary

• ID
  rs8269676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164674967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACGGGGG CAGAAGAGAA
  CACCCAAGCG GCTTCGGCGC GCTGTAGGAG GCAGCACGTT TTGTTCATAG AGCTGATCTA
  AGAGGTGGCT ATAAAGCCCT GGCCGGCTGC GGCCCACCAG ACGGTCCCGG GGAATTCGGA
  ACTGCTCGAT GCGCAGATAG GGTTCAACCA GTAGGGCTTG GGGACCACTG GGGACCGCTG
  Y
  CTCCGCTTCT GGTTGACCTT CCCGGGGCAC ACGGTTGTGG TGGCGTGTGA TAGCGAAGAC
  CCAACTGTGG CCAAGGCTGA CCAAGTCAGG CAGTGAAAAC TCGGGTACAG CGGCCAGACT
  GGCGGGATCC AGAGCGGTCA GGCCAAGACG TAAGTGCCCG CACCAGCCCA GCTCTTTTTC
  CTCAATTTCC ACTAGAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12766827	Ppgb_JC7729_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8269676					SNP	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164674967 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12674	CpG island 12674			within coordinates
Ctsa	cathepsin A			mRNA-UTR
				Noncoding-Transcript-Variant
Neurl2	neuralized E3 ubiquitin protein ligase 2			Coding-NonSynonymous
Rr367364	regulatory region 367364			715 bp upstream
Rr397479	regulatory region 397479			1544 bp downstream
Rr569727	regulatory region 569727			1658 bp distal
Rr569728	regulatory region 569728			798 bp distal
Rr569729	regulatory region 569729			136 bp distal
Rr569730	regulatory region 569730			399 bp proximal
Tssr21656	transcription start site region 21656			169 bp downstream
Tssr21657	transcription start site region 21657			112 bp downstream
Tssr21658	transcription start site region 21658			77 bp downstream
Tssr21659	transcription start site region 21659			719 bp upstream
Tssr21660	transcription start site region 21660			734 bp upstream
Tssr21661	transcription start site region 21661			794 bp upstream
Tssr21662	transcription start site region 21662			968 bp upstream
Tssr21663	transcription start site region 21663			1029 bp upstream
Tssr21664	transcription start site region 21664			1060 bp upstream
Tssr21665	transcription start site region 21665			1816 bp upstream
Tssr27546	transcription start site region 27546			391 bp downstream