rs8269678 SNP Detail

Summary

• ID
  rs8269678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164675120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATAGGGT TCAACCAGTA
  GGGCTTGGGG ACCACTGGGG ACCGCTGCCT CCGCTTCTGG TTGACCTTCC CGGGGCACAC
  GGTTGTGGTG GCGTGTGATA GCGAAGACCC AACTGTGGCC AAGGCTGACC AAGTCAGGCA
  GTGAAAACTC GGGTACAGCG GCCAGACTGG CGGGATCCAG AGCGGTCAGG CCAAGACGTA
  R
  GTGCCCGCAC CAGCCCAGCT CTTTTTCCTC AATTTCCACT AGAAATACCT GGCCGGGGGC
  CAGGGGCTCA CGACTGAAGC ACACACCGTG GGCGAAACTC TCCACGCGTG TGGCTCGCGT
  TCCTGAGGGG TCCATGCGGA TGTTGGCTCC ATGCACTTGG TGGAAGCGGG TGGGAGGGGG
  CTCTGGGCGC GCAGGGCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12766829	Ppgb_JC7729_4	ROCHEBIO	RPAMM	f	SNP	G			A	A	A	A	A	A								A			G
ss24757406	Ppgb_JC7729_5	ROCHEBIO	RPAMM	f	SNP	G			A	A	A	A	A	A						A		A		A	G
ss37516090	NES08883266	PERLEGEN	MM_PANEL2	f	SNP		G			A	A		A		A	A		G	A		A		A			A
ss45329703	mCV23739728	ABI	CRAMUS_MOUSE	f	SNP			G		A							A		A
ss148232113	ENSMUSSNP349906	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		A									A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8269678					SNP	G	G	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516090	NES08883266	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164675120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	within coordinates
Ctsa	cathepsin A	within coordinates
Neurl2	neuralized E3 ubiquitin protein ligase 2	within coordinates
Rr367364	regulatory region 367364	562 bp upstream
Rr397479	regulatory region 397479	1697 bp downstream
Tssr21656	transcription start site region 21656	322 bp downstream
Tssr21657	transcription start site region 21657	265 bp downstream
Tssr21658	transcription start site region 21658	230 bp downstream
Tssr21659	transcription start site region 21659	566 bp upstream
Tssr21660	transcription start site region 21660	581 bp upstream
Tssr21661	transcription start site region 21661	641 bp upstream
Tssr21662	transcription start site region 21662	815 bp upstream
Tssr21663	transcription start site region 21663	876 bp upstream
Tssr21664	transcription start site region 21664	907 bp upstream
Tssr21665	transcription start site region 21665	1663 bp upstream
Tssr21666	transcription start site region 21666	1974 bp upstream
Tssr27546	transcription start site region 27546	238 bp downstream