rs8269679 SNP Detail

Summary

• ID
  rs8269679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164675578 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TATTA GTCAGGGTGC CAGAGATCAG
  R
  TGATCTTGGT GTTGACAGAA GGGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12766830	Ppgb_JC7730_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8269679					SNP	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164675578 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12674	CpG island 12674			within coordinates
Ctsa	cathepsin A			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Neurl2	neuralized E3 ubiquitin protein ligase 2			202 bp upstream
Rr367364	regulatory region 367364			104 bp upstream
Rr569728	regulatory region 569728			1409 bp distal
Rr569729	regulatory region 569729			747 bp distal
Rr569730	regulatory region 569730			within coordinates
Tssr21656	transcription start site region 21656			780 bp downstream
Tssr21657	transcription start site region 21657			723 bp downstream
Tssr21658	transcription start site region 21658			688 bp downstream
Tssr21659	transcription start site region 21659			108 bp upstream
Tssr21660	transcription start site region 21660			123 bp upstream
Tssr21661	transcription start site region 21661			183 bp upstream
Tssr21662	transcription start site region 21662			357 bp upstream
Tssr21663	transcription start site region 21663			418 bp upstream
Tssr21664	transcription start site region 21664			449 bp upstream
Tssr21665	transcription start site region 21665			1205 bp upstream
Tssr21666	transcription start site region 21666			1516 bp upstream
Tssr21667	transcription start site region 21667			1569 bp upstream
Tssr21668	transcription start site region 21668			1971 bp upstream
Tssr27546	transcription start site region 27546			178 bp upstream