rs8269680 SNP Detail

Summary

• ID
  rs8269680
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164675576 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTAGT CAGGGTGCCA GAGATCAGGT
  K
  ATCTTGGTGT TGACAGAAGG GTTCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
ss12766831	Ppgb_JC7730_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	T	G	G	G		T	G		G
ss320606928	CHEV_2_164659156	CHEVERUD	SCREENING_POP	r	SNP								A			C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
rs8269680					SNP	G	G	G	T	G	G	G	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164675576 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	within coordinates
Ctsa	cathepsin A	within coordinates
Neurl2	neuralized E3 ubiquitin protein ligase 2	200 bp upstream
Rr367364	regulatory region 367364	106 bp upstream
Rr569728	regulatory region 569728	1407 bp distal
Rr569729	regulatory region 569729	745 bp distal
Rr569730	regulatory region 569730	within coordinates
Tssr21656	transcription start site region 21656	778 bp downstream
Tssr21657	transcription start site region 21657	721 bp downstream
Tssr21658	transcription start site region 21658	686 bp downstream
Tssr21659	transcription start site region 21659	110 bp upstream
Tssr21660	transcription start site region 21660	125 bp upstream
Tssr21661	transcription start site region 21661	185 bp upstream
Tssr21662	transcription start site region 21662	359 bp upstream
Tssr21663	transcription start site region 21663	420 bp upstream
Tssr21664	transcription start site region 21664	451 bp upstream
Tssr21665	transcription start site region 21665	1207 bp upstream
Tssr21666	transcription start site region 21666	1518 bp upstream
Tssr21667	transcription start site region 21667	1571 bp upstream
Tssr21668	transcription start site region 21668	1973 bp upstream
Tssr27546	transcription start site region 27546	176 bp upstream